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ArchaeoNatural Ontology (ArNO)

Metadata

URI
http://archaeonatural.cloud/ont/
Publisher(s)
Kiel University
Creator(s)
Mattis thor Straten
Contributor(s)
Florian Thiery
Version Information
0.1
Ontology RDF
RDF (turtle)

Description

This ontology contains classes to describe the archaeo-natural data of NFDI4Objects Task Area 3: currently Poseidon, soon ArboDat & Ossobook.

Table of Contents

  1. Classes
  2. Object Properties
  3. Datatype Properties
  4. Annotation Properties
  5. Named Individuals
  6. Namespaces
  7. Legend

Overview

Pictures say 1,000 words
Figure 1: Ontology overview

Classes

LADO Actor as a Conceptc # Classes

URI http://archaeology.link/ontology#Actor
Super-classes crm:E39_Actorc
Sub-classes lado:ActorEntityc
In domain of lado:hasEntityop

LADO Actor Entityc # Classes

URI http://archaeology.link/ontology#ActorEntity
Super-classes lado:Actorc
In domain of lado:interactsWithop
In range of lado:hasEntityop
lado:interactsWithop

LADO Discovery Sitec # Classes

URI http://archaeology.link/ontology#DiscoverySite
Super-classes lado:Locationc

LADO Kiln Regionc # Classes

URI http://archaeology.link/ontology#KilnRegion
Super-classes lado:Locationc
Sub-classes lado:ProductionCentrec

LADO Locationc # Classes

URI http://archaeology.link/ontology#Location
Super-classes pleiades:Locationc
Sub-classes lado:RepositoryLocationc
lado:KilnRegionc
lado:DiscoverySitec
In range of lado:hasLocationop

LADO Place as a Conceptc # Classes

URI http://archaeology.link/ontology#Place
Description

place as a concept, just a label

Super-classes pleiades:Placec
Sub-classes Placec
Countryc
In domain of lado:hasLocationop

LADO Production Centrec # Classes

URI http://archaeology.link/ontology#ProductionCentre
Super-classes lado:KilnRegionc

LADO Repository Locationc # Classes

URI http://archaeology.link/ontology#RepositoryLocation
Super-classes lado:Locationc

Biological Samplec # Classes

URI http://archaeonatural.cloud/ont/BiologicalSample
Description

Sample consisting of of biological material

Super-classes Samplec
crm:E20_Biological_Objectc
Sub-classes ancient DNA Samplec
In domain of of source tissueop
dated byop
has genetic sexop

C14 Datingc # Classes

URI http://archaeonatural.cloud/ont/C14Dating
Description

Radiocarbon (C14) dating is a method for determining the age of an object containing organic material by using the properties of radiocarbon, a radioactive isotope of carbon.

Super-classes Datingc
In domain of c14 dating informationdp
has lab numberdp
has uncalibrated datedp
has dating errordp

Capture Typec # Classes

URI http://archaeonatural.cloud/ont/CaptureType
Description

specifics of the data generation method (e.g. capture method) for the individual libraries generated for the sample

Super-classes skos:Conceptc
In range of has capture typeop

Contaminationc # Classes

URI http://archaeonatural.cloud/ont/Contamination
Description

(modern) contamination of the sample as measured by the contamination measure

Super-classes obo:PATO_0015031c
crm:E16_Measurementc
In domain of measured contaminationop
used contamination measureop
has contamination errordp

Contamination Measurec # Classes

URI http://archaeonatural.cloud/ont/ContaminationMeasure
Description

method to measure contamination, should be a software tool (ANGSD, Schmutzi, ...) and the respective software versions

Super-classes crmdig:D10_Software_Executionc
In range of used contamination measureop

Countryc # Classes

URI http://archaeonatural.cloud/ont/Country
Description

Country according to ISO 3166

Super-classes lado:Placec
In domain of has ISO codedp
In range of in countryop

Datasetc # Classes

URI http://archaeonatural.cloud/ont/Dataset
Description

Dataset containing information used to create RDF data

Super-classes crmdig:D1_Digital_Objectc
In domain of has versiondp

Datingc # Classes

URI http://archaeonatural.cloud/ont/Dating
Description

The activity of dating a (aDNA) sample

Super-classes crm:E7_Activityc
Sub-classes C14 Datingc
In domain of observed time periodop
has dating typeop
dating informationop
In range of dated byop

Dating Typec # Classes

URI http://archaeonatural.cloud/ont/DatingType
Description

type of dating information available for the sample, C14 if there is a set of radiocarbon dates whose post-calibration probability distribution is a meaningful prior for the individual's year of death, contextual for any other age information only given in modern for present-day individuals

Super-classes skos:Conceptc
In range of has dating typeop

Discovery Sitec # Classes

URI http://archaeonatural.cloud/ont/DiscoverySite
Description

Exact spatial location where a sample was found, defined by latitude and longitude WGS84 dd values

Super-classes pleiades:Locationc
In domain of at siteop
In range of found at disovery siteop

Genetic Sexc # Classes

URI http://archaeonatural.cloud/ont/GeneticSex
Description

genetic sex of the individual derived from this sample, only F, M or U because the EIGENSTRAT and PLINK formats only support these three, edge cases (e.g. XXY, XYY, X0) are undefined and should be grouped as F, M or U, with a Note added

Super-classes obo:GSSO_000114c
In range of has genetic sexop

Genetic Source Accessionc # Classes

URI http://archaeonatural.cloud/ont/GeneticSourceAccession
Description

ENA or SRA accession identifiers pointing to the source data used to generate the genotyping data for the sample

Super-classes skos:Conceptc
In domain of part of genetic source accessionop
In range of from genetic source accessionop
part of genetic source accessionop

Genomic Libraryc # Classes

URI http://archaeonatural.cloud/ont/GenomicLibrary
Description

Genomic library used to generate the genotype data for the sample

Super-classes crm:E18_Physical_Thingc
In range of part of genomic libraryop

Genotype Ploidyc # Classes

URI http://archaeonatural.cloud/ont/GenotypePloidy
Description

ploidy of the genotypes for the sample

Super-classes skos:Conceptc
obo:PATO_0001374c
In range of has genotype ploidyop

Groupc # Classes

URI http://archaeonatural.cloud/ont/Group
Description

meaningful population/group identifiers for the sample for Poseidon it should follow the geographic-temporal nomenclature proposed by Eisenmann et al. 2018 (https://doi.org/10.1038/s41598-018-31123-z)

Super-classes crm:E28_Conceptual_Objectc
In range of part of groupop

Haplogroup Measurementc # Classes

URI http://archaeonatural.cloud/ont/HaplogroupMeasurement
Description

Measurement of haplogroup information

Super-classes crm:E16_Measurementc
Sub-classes Y-Haplogroup Measurementc
MT-Haplogroup Measurementc
In domain of measured haplogroupop

Journalc # Classes

URI http://archaeonatural.cloud/ont/Journal
Description

Journal where literature is published

Super-classes bibo:Journalc
In range of in journalop

Library Strandednessc # Classes

URI http://archaeonatural.cloud/ont/LibraryStrandedness
Description

strandedness of the libraries, "mixed" in case multiple libraries with different protocols were merged

Super-classes skos:Conceptc
In range of has library strandednessop

Literaturec # Classes

URI http://archaeonatural.cloud/ont/Literature
Description

Literature, most of the times this is a scientific paper

Super-classes bibo:Documentc
In domain of written byop
in journalop
has DOIop
published in yearop
has titledp
published sampleop

MT-Haplogroup Measurementc # Classes

URI http://archaeonatural.cloud/ont/MTHaplogroupMeasurement
Description

Measurement of the mitochondrial haplogroup derived for the sample as specified on phylotree.org and as reported by the Haplofind or Haplogrep software tools

Super-classes Haplogroup Measurementc
In domain of measured MT-haplogroupop

Personc # Classes

URI http://archaeonatural.cloud/ont/Person
Description

A person, might have different roles like author of literature or primary contact for questions

Super-classes crm:E21_Personc
In domain of has ORCIDop
In range of written byop
has primary contactop
Members orcid:0000-0002-3246-3531
orcid:0009-0005-1140-3352

Placec # Classes

URI http://archaeonatural.cloud/ont/Place
Description

unspecified location information for the sample, e.g. administrative or topographic region or mountains/rivers/lakes/cities nearby

Super-classes lado:Placec
In domain of in countryop
In range of at placeop

Preparation Pipelinec # Classes

URI http://archaeonatural.cloud/ont/PreparationPipeline
Description

computational pipeline used to generate the genotype data from the source data

Super-classes crm:E29_Design_or_Procedurec
In range of prepared by preparation pipelineop

Samplec # Classes

URI http://archaeonatural.cloud/ont/Sample
Description

A physically existing Sample

Super-classes crm:E19_Physical_Objectc
Sub-classes Biological Samplec
In domain of sample measurementsdp
part of groupop
found at disovery siteop
has collection IDdp
In range of published sampleop
measured contaminationop

Sitec # Classes

URI http://archaeonatural.cloud/ont/Site
Super-classes pleiades:Locationc
In domain of at placeop
In range of at siteop

Source Tissuec # Classes

URI http://archaeonatural.cloud/ont/SourceTissue
Description

skeletal element, tissue or other material sampled, the specific bone should be reported after an underscore (e.g. bone_phalanx)

Super-classes obo:UBERON_0000479c
In domain of has source tissue typeop
In range of of source tissueop

Source Tissue Typec # Classes

URI http://archaeonatural.cloud/ont/SourceTissueType
Description

type of material sampled

Super-classes skos:Conceptc
In range of has source tissue typeop

Time Periodc # Classes

URI http://archaeonatural.cloud/ont/TimePeriod
Description

Period of time defined by a starting and ending year in BC/AD

Super-classes crm:E52_Time-Spanc
time:Intervalc
In range of observed time periodop

UDG Treatmentc # Classes

URI http://archaeonatural.cloud/ont/UDGTreatment
Description

udg treatment for the libraries, mixed in case multiple libraries with different UDG treatment were merged

Super-classes skos:Conceptc
In range of has UDG treatmentop

Unknown Entityc # Classes

URI http://archaeonatural.cloud/ont/Unknown
Description

Entity type for blank nodes created for missing data values to allow transitive information modelling - e.g., connect Discovery Site and Location via a blank node Site if there is no Site information in the data

Super-classes crm:E1_CRM_Entityc

Y-Haplogroup Measurementc # Classes

URI http://archaeonatural.cloud/ont/YHaplogroupMeasurement
Description

Measurement of the Y-chromosome haplogroup derived for the sample following a syntax with the main branch + the most terminal derived Y-SNP (e.g. R1b-P312)

Super-classes Haplogroup Measurementc
In domain of measured Y-haplogroupop

ancient DNA Samplec # Classes

URI http://archaeonatural.cloud/ont/aDNASample
Description

ancient DNA sample probed in a genetics laboratory

Super-classes Biological Samplec
In domain of measured damagedp
part of genomic libraryop
has SNP countdp
has primary contactop
has UDG treatmentop
has library strandednessop
relates to aDNA sampleop
from genetic source accessionop
prepared by preparation pipelineop
has genotype ploidyop
measured SNP coveragedp
has capture typeop
measured endogenous DNAdp
has library countdp
In range of measured haplogroupop
related by aDNA sampleop
measured Y-haplogroupop
measured MT-haplogroupop

aDNA sample relationc # Classes

URI http://archaeonatural.cloud/ont/aDNASampleRelation
Description

This Reification Class is used to store attributes of the relationship between aDNA samples

Super-classes crm:E1_CRM_Entityc
In domain of related by aDNA sampleop
aDNA sample relationship propertiesdp
has relationship typedp
has relationship degreedp
In range of relates to aDNA sampleop

External Identifier Typec # Classes

URI http://archaeonatural.cloud/ont/externalIdentifierType
Description

typing of external ressources

Super-classes skos:Conceptc
Members http://archaeonatural.cloud/ExternalIdentifier_Wikidata
http://archaeonatural.cloud/ExternalIdentifier_Geonames

BFO entityc # Classes

URI http://purl.obolibrary.org/obo/BFO_0000001
Description

An entity is anything that exists or has existed or will exist.

Super-classes schema:Thingc
Sub-classes crm:E1_CRM_Entityc

GSSO genetic sexc # Classes

URI http://purl.obolibrary.org/obo/GSSO_000114
Description

Sex as determined by the presence and/or activation of particular genes or combinations of genes, without regard to phenotypic manifestations.

Super-classes skos:Conceptc
Sub-classes Genetic Sexc

PATO qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000001
Description

A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entitie

Super-classes crm:E1_CRM_Entityc
Sub-classes obo:PATO_0001241c

PATO compositionc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000025
Description

A single physical entity inhering in an bearer by virtue of the bearer's quantities or relative ratios of subparts.

Super-classes obo:PATO_0000141c
Sub-classes obo:PATO_0015031c

PATO morphologyc # Classes

URI http://purl.obolibrary.org/obo/PATO_0000051
Description

A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.

Super-classes obo:PATO_0001241c
Sub-classes obo:PATO_0000141c

PATO structurec # Classes

URI http://purl.obolibrary.org/obo/PATO_0000141
Description

A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.

Super-classes obo:PATO_0000051c
Sub-classes obo:PATO_0000025c

PATO physical object qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001241
Description

A quality which inheres in a continuant.

Super-classes obo:PATO_0000001c
Sub-classes obo:PATO_0000051c
obo:PATO_0070044c

PATO ploidyc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001374
Description

A cellular quality inhering in a bearer by virtue of the bearer's number of homologous sets of chromosomes in the nucleus or primary chromosome-containing compartment of the cell, each set essentially coding for all the biological traits of the organism.

Super-classes obo:PATO_0001396c
Sub-classes Genotype Ploidyc

PATO cellular qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0001396
Description

A monadic quality of continuant that exists at the cellular level of organisation.

Super-classes obo:PATO_0070044c
Sub-classes obo:PATO_0001374c

PATO contaminationc # Classes

URI http://purl.obolibrary.org/obo/PATO_0015031
Description

The presence of a constituent, impurity, or some other undesirable element that spoils, corrupts, infects, makes unfit, or makes inferior a material, physical body, natural environment, place of human occupancy, or other material entity.

Super-classes obo:PATO_0000025c
Sub-classes Contaminationc

PATO anatomical structure qualityc # Classes

URI http://purl.obolibrary.org/obo/PATO_0070044
Description

A quality of continuant that exist at the anatomical level of organisation and anything under it. This includes, but is not limited to, cells , tissues, and components.

Super-classes obo:PATO_0001241c
Sub-classes obo:PATO_0001396c

UBERON tissuec # Classes

URI http://purl.obolibrary.org/obo/UBERON_0000479
Description

Multicellular anatomical structure that consists of many cells of one or a few types, arranged in an extracellular matrix such that their long-range organisation is at least partly a repetition of their short-range organisation.

Super-classes crm:E20_Biological_Objectc
Sub-classes Source Tissuec

DC Agentc # Classes

URI http://purl.org/dc/terms/Agent
Description

A resource that acts or has the power to act.

Super-classes crm:E77_Persistent_Itemc
In range of dct:creatorop

BIBO Collectionc # Classes

URI http://purl.org/ontology/bibo/Collection
Description

A collection of Documents or Collections

Super-classes crm:E31_Documentc
Sub-classes bibo:Periodicalc

BIBO Documentc # Classes

URI http://purl.org/ontology/bibo/Document
Description

A document (noun) is a bounded physical representation of body of information designed with the capacity (and usually intent) to communicate. A document may manifest symbolic, diagrammatic or sensory-representational information.

Super-classes crm:E31_Documentc
Sub-classes Literaturec

BIBO Journalc # Classes

URI http://purl.org/ontology/bibo/Journal
Description

A periodical of scholarly journal Articles.

Super-classes bibo:Periodicalc
Sub-classes Journalc

BIBO Periodicalc # Classes

URI http://purl.org/ontology/bibo/Periodical
Description

A group of related documents issued at regular intervals.

Super-classes bibo:Collectionc
Sub-classes bibo:Journalc

Software Applicationc # Classes

URI http://schema.org/SoftwareApplication
Description

A software application.

Super-classes prov:SoftwareAgentc
Sub-classes schema:SoftwareSourceCodec

Software Source Codec # Classes

URI http://schema.org/SoftwareSourceCode
Description

Computer programming source code. Example: Full (compile ready) solutions, code snippet samples, scripts, templates.

Super-classes schema:SoftwareApplicationc
Members www:SoftwareSourceCode_Poseidon_LOD

Thingc # Classes

URI http://schema.org/Thing
Description

The most generic type of item.

Super-classes prov:Entityc
Sub-classes obo:BFO_0000001c

E11 Modificationc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E11_Modification
Description

This class comprises instances of E7 Activity that are undertaken to create, alter or change instances of E24 Physical Human-Made Thing. This class includes the production of an item from raw materials and other so far undocumented objects. It also includes the conservation treatment of an object. Since the distinction between modification and production is not always clear, modification is regarded as the more generally applicable concept. This implies that some items may be consumed or destroyed in an instance of E11 Modification, and that others may be produced as a result of it. An event should also be documented using an instance of E81 Transformation if it results in the destruction of one or more objects and the simultaneous production of others using parts or material from the originals. In this case, the new items have separate identities. An activity undertaken on an object which was designed to alter it, but which, in fact, it did not in any seemingly significant way (such as the application of a solvent during conservation which failed to dissolve any part of the object), is still considered as an instance of E11 Modification. Typically, any such activity will leave at least forensic traces of evidence on the object. If the instance of E29 Design or Procedure utilized for the modification prescribes the use of specific materials, they should be documented using property P68 foresees use of (use foreseen by): E57 Material of E29 Design or Procedure, rather than via P126 employed (was employed in): E57 Material.

Super-classes crm:E7_Activityc
Sub-classes crmdig:D7_Digital_Machine_Eventc

E13 Attribute Assignmentc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E13_Attribute_Assignment
Description

This class comprises the actions of making assertions about one property of an object or any single relation between two items or concepts. The type of the property asserted to hold between two items or concepts can be described by the property P177 assigned property of type (is type of property assigned): E55 Type. For example, the class describes the actions of people making propositions and statements during certain scientific/scholarly procedures, e.g. the person and date when a condition statement was made, an identifier was assigned, the museum object was measured, etc. Which kinds of such assignments and statements need to be documented explicitly in structures of a schema rather than free text, depends on whether this information should be accessible by structured queries. This class allows for the documentation of how the respective assignment came about, and whose opinion it was. Note that all instances of properties described in a knowledge base are the opinion of someone. Per default, they are the opinion of the team maintaining the knowledge base. This fact must not individually be registered for all instances of properties provided by the maintaining team, because it would result in an endless recursion of whose opinion was the description of an opinion. Therefore, the use of instances of E13 Attribute Assignment marks the fact that the maintaining team is in general neutral to the validity of the respective assertion, but registers someone else’s opinion and how it came about. All properties assigned in such an action can also be seen as directly relating the respective pair of items or concepts. Multiple use of instances of E13 Attribute Assignment may possibly lead to a collection of contradictory values.

Super-classes crm:E7_Activityc
Sub-classes crm:E16_Measurementc
In domain of crm:P140_assigned_attribute_toop

E16 Measurementc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E16_Measurement
Description

This class comprises actions measuring physical properties and other values that can be determined by a systematic, objective procedure of direct observation of particular states of physical reality. An instance of E16 Measurement may use simple counting or tools, such as yardsticks or radiation detection devices. The interest is in the method and care applied, so that the reliability of the result may be judged at a later stage, or research continued on the associated documents. The date of the event is important for dimensions, which may change value over time, such as the length of an object subject to shrinkage. Methods and devices employed should be associated with instances of E16 Measurement by properties such as P33 used specific technique: E29 Design or Procedure, P125 used object of type: E55 Type, P16 used specific object (was used for): E70 Thing, whereas basic techniques such as "carbon-14 dating" should be encoded using P2 has type (is type of): E55 Type. Details of methods and devices reused or reusable in other instances of E16 Measurement should be documented for these entities rather than the measurements themselves, whereas details of particular execution may be documented by free text or by instantiating adequate sub-activities, if the detail may be of interest for an overarching query. Regardless whether a measurement is made by an instrument or by human senses, it represents the initial transition from physical reality to information without any other documented information object in between within the reasoning chain that would represent the result of the interaction of the observer or device with reality. Therefore, determining properties of an instance of E90 Symbolic Object is regarded as an instance of E13 Attribute Assignment, which may be inferred from observing and measuring representative carriers. In the case that the carrier can be named, the property P16 used specific object (was used for) should be used to indicate the instance(s) of E18 Physical Thing that was used as the empirical basis for the attribute assignment. For instance, inferring properties of depicted items using image material, such as satellite images, is not regarded as an instance of E16 Measurement, but as a subsequent instance of E13 Attribute Assignment. Rather, only the production of the images, understood as arrays of radiation intensities, is regarded as an instance of E16 Measurement. The same reasoning holds for other sensor data.

Super-classes crm:E13_Attribute_Assignmentc
Sub-classes Contaminationc
Haplogroup Measurementc
In domain of crm:P39_measuredop
has numeric valuedp
has valuedp
has textual valuedp

E18 Physical Thingc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E18_Physical_Thing
Description

This class comprises all persistent physical items with a relatively stable form, human-made or natural. Depending on the existence of natural boundaries of such things, the CIDOC CRM distinguishes the instances of E19 Physical Object from instances of E26 Physical Feature, such as holes, rivers, pieces of land, etc. Most instances of E19 Physical Object can be moved (if not too heavy), whereas features are integral to the surrounding matter. An instance of E18 Physical Thing occupies not only a particular geometric space at any instant of its existence, but in the course of its existence it also forms a trajectory through spacetime, which occupies a real, that is phenomenal, volume in spacetime. We include in the occupied space the space filled by the matter of the physical thing and all its inner spaces, such as the interior of a box. For the purpose of more detailed descriptions of the presence of an instance of E18 Physical Thing in space and time it can be associated with its specific instance of E92 Spacetime Volume by the property P196 defines (is defined by). The CIDOC CRM is generally not concerned with amounts of matter in fluid or gaseous states, as long as they are not confined in an identifiable way for an identifiable minimal time-span.

Super-classes crm:E72_Legal_Objectc
Sub-classes crm:E19_Physical_Objectc
crm:E26_Physical_Featurec
Genomic Libraryc
In domain of crm:P53_has_former_or_current_locationop
crm:P49_has_former_or_current_keeperop
crm:P46_is_composed_ofop
crm:P46i_forms_part_ofop
crm:P50_has_current_keeperop
In range of crm:P46_is_composed_ofop
crm:P46i_forms_part_ofop
crm:P39_measuredop

E19 Physical Objectc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E19_Physical_Object
Description

This class comprises items of a material nature that are units for documentation and have physical boundaries that separate them completely in an objective way from other objects. The class also includes all aggregates of objects made for functional purposes of whatever kind, independent of physical coherence, such as a set of chessmen. Typically, instances of E19 Physical Object can be moved (if not too heavy). In some contexts, such objects, except for aggregates, are also called “bona fide objects”, i.e. naturally defined objects (Smith & Varzi, 2000). The decision as to what is documented as a complete item, rather than by its parts or components, may be purely administrative or may be a result of the order in which the item was acquired.

Super-classes crm:E18_Physical_Thingc
Sub-classes crm:E20_Biological_Objectc
Samplec

E1 CRM Entityc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E1_CRM_Entity
Description

This class comprises all things in the universe of discourse of the CIDOC Conceptual Reference Model. It is an abstract concept providing for three general properties: 1. Identification by name or appellation, and in particular by a preferred identifier 2. Classification by type, allowing further refinement of the specific subclass an instance belongs to 3. Attachment of free text for the expression of anything not captured by formal properties With the exception of E59 Primitive Value, all other classes within the CRM are directly or indirectly specialisations of E1 CRM Entity.

Super-classes obo:BFO_0000001c
Sub-classes Unknown Entityc
crm:E2_Temporal_Entityc
time:TemporalEntityc
aDNA sample relationc
obo:PATO_0000001c
crm:E92_Spacetime_Volumec
crm:E52_Time-Spanc
crm:E77_Persistent_Itemc
pleiades:Placec
In domain of has errordp
crm:P3_has_notedp
has notedp
crm:P2_has_typeop
In range of crm:P140_assigned_attribute_toop
crm:P67_refers_toop

E20 Biological Objectc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E20_Biological_Object
Description

This class comprises individual items of a material nature, which live, have lived, or are natural products of or from living organisms. Artificial objects that incorporate biological elements, such as Victorian butterfly frames, can be documented as both instances of E20 Biological Object and E22 Human-Made Object.

Super-classes crm:E19_Physical_Objectc
Sub-classes Biological Samplec
crm:E21_Personc
obo:UBERON_0000479c
In domain of has keyworddp

E21 Personc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E21_Person
Description

This class comprises real persons who live or are assumed to have lived. Legendary figures that may have existed, such as Ulysses and King Arthur, fall into this class if the documentation refers to them as historical figures. In cases where doubt exists as to whether several persons are in fact identical, multiple instances can be created and linked to indicate their relationship. The CIDOC CRM does not propose a specific form to support reasoning about possible identity. In a bibliographic context, a name presented following the conventions usually employed for personal names will be assumed to correspond to an actual real person (an instance of E21 Person), unless evidence is available to indicate that this is not the case. The fact that a persona may erroneously be classified as an instance of E21 Person does not imply that the concept comprises personae.

Super-classes crm:E20_Biological_Objectc
prov:Personc
Sub-classes Personc

E26 Physical Featurec # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E26_Physical_Feature
Description

This class comprises identifiable features that are physically attached in an integral way to particular physical objects. Instances of E26 Physical Feature share many of the attributes of instances of E19 Physical Object. They may have a one-dimensional, two-dimensional, or three-dimensional geometric extent, but there are no natural borders that separate them completely in an objective way from the carrier objects. For example, a doorway is a feature but the door itself, being attached by hinges, is not. Instances of E26 Physical Feature can be features in a narrower sense, such as scratches, holes, reliefs, surface colours, reflection zones in an opal crystal or a density change in a piece of wood. In the wider sense, they are portions of particular objects with partially imaginary borders, such as the core of the Earth, an area of property on the surface of the Earth, a landscape or the head of a contiguous marble statue. They can be measured and dated, and it is sometimes possible to state who or what is or was responsible for them. They cannot be separated from the carrier object, but a segment of the carrier object may be identified (or sometimes removed) carrying the complete feature. This definition coincides with the definition of “fiat objects”, with the exception of aggregates of “bona fide objects” (Smith & Varzi, 2000).

Super-classes crm:E18_Physical_Thingc
Sub-classes crm:E27_Sitec

E27 Sitec # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E27_Site
Description

This class comprises pieces of land or sea floor. In contrast to the purely geometric notion of E53 Place, this class describes constellations of matter on the surface of the Earth or other celestial body, which can be represented by photographs, paintings, and maps. Instances of E27 Site are composed of relatively immobile material items and features in a particular configuration at a particular location.

Super-classes crm:E26_Physical_Featurec
Sub-classes pleiades:Locationc

E28 Conceptual Objectc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E28_Conceptual_Object
Description

This class comprises non-material products of our minds and other human produced data that have become objects of a discourse about their identity, circumstances of creation, or historical implication. The production of such information might have been supported by the use of technical devices such as cameras or computers. Characteristically, instances of this class are created, invented or thought by someone, and then may be documented or communicated between persons. Instances of E28 Conceptual Object have the ability to exist on more than one particular carrier at the same time, such as paper, electronic signals, marks, audio media, paintings, photos, human memories, etc. They cannot be destroyed. They exist as long as they can be found on at least one carrier or in at least one human memory. Their existence ends when the last carrier and the last memory are lost.

Super-classes crm:E71_Human-Made_Thingc
Sub-classes crm:E90_Symbolic_Objectc
crm:E55_Typec
crm:E89_Propositional_Objectc
Groupc

E29 Design or Procedurec # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E29_Design_or_Procedure
Description

This class comprises documented plans for the execution of actions in order to achieve a result of a specific quality, form, or contents. In particular, it comprises plans for deliberate human activities that may result in new instances of E71 Human-Made Thing or for shaping or guiding the execution of an instance of E7 Activity. Instances of E29 Design or Procedure can be structured in parts and sequences or depend on others. This is modelled using P69 has association with (is associated with): E29 Design or Procedure. Designs or procedures can be seen as one of the following: 1. A schema for the activities it describes 2. A schema of the products that result from their application 3. An independent intellectual product that may have never been applied, such as Leonardo da Vinci’s famous plans for flying machines Because designs or procedures may never be applied or only partially executed, the CIDOC CRM models a loose relationship between the plan and the respective product.

Super-classes crm:E73_Information_Objectc
Sub-classes Preparation Pipelinec

E2 Temporal Entityc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E2_Temporal_Entity
Description

This class comprises all phenomena, such as the instances of E4 Periods and E5 Events, which happen over a limited extent in time. This extent in time must be contiguous, i.e., without gaps. In case the defining kinds of phenomena for an instance of E2 Temporal Entity cease to happen, and occur later again at another time, we regard that the former instance of E2 Temporal Entity has ended and a new instance has come into existence. In more intuitive terms, the same event cannot happen twice. In some contexts, such phenomena are also called perdurants. This class is disjoint from E77 Persistent Item and is an abstract class that typically has no direct instances. E2 Temporal Entity is specialized into E4 Period, which applies to a particular geographic area (defined with a greater or lesser degree of precision), and E3 Condition State, which applies to instances of E18 Physical Thing.

Super-classes crm:E1_CRM_Entityc
Sub-classes crm:E4_Periodc

E31 Documentc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E31_Document
Description

This class comprises identifiable immaterial items that make propositions about reality. These propositions may be expressed in text, graphics, images, audiograms, videograms, or by other similar means. Documentation databases are regarded as instances of E31 Document. This class should not be confused with the concept “document” in Information Technology, which is compatible with E73 Information Object.

Super-classes crm:E73_Information_Objectc
Sub-classes bibo:Documentc
bibo:Collectionc

E39 Actorc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E39_Actor
Description

This class comprises people, either individually or in groups, who have the potential to perform intentional actions of kinds for which someone may be held responsible. The CRM does not attempt to model the inadvertent actions of such actors. Individual people should be documented as instances of E21 Person, whereas groups should be documented as instances of either E74 Group or its subclass E40 Legal Body.

Super-classes prov:Agentc
Sub-classes foaf:Personc
prov:SoftwareAgentc
lado:Actorc
foaf:Organizationc
In range of crm:P50_has_current_keeperop
crm:P49_has_former_or_current_keeperop

E4 Periodc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E4_Period
Description

This class comprises sets of coherent phenomena or cultural manifestations occurring in time and space. It is the social or physical coherence of these phenomena that identify an instance of E4 Period and not the associated spatiotemporal extent. This extent is only the “ground” or space in an abstract physical sense that the actual process of growth, spread and retreat has covered. Consequently, different periods can overlap and coexist in time and space, such as when a nomadic culture exists in the same area and time as a sedentary culture. This also means that overlapping land use rights, common among first nations, amounts to overlapping periods. Often, this class is used to describe prehistoric or historic periods such as the “Neolithic Period”, the “Ming Dynasty” or the “McCarthy Era”, but also geopolitical units and activities of settlements are regarded as special cases of E4 Period. However, there are no assumptions about the scale of the associated phenomena. In particular all events are seen as synthetic processes consisting of coherent phenomena. Therefore, E4 Period is a superclass of E5 Event. For example, a modern clinical birth, an instance of E67 Birth, can be seen as both a single event, i.e. an instance of E5 Event, and as an extended period, i.e. an instance of E4 Period, that consists of multiple physical processes and complementary activities performed by multiple instances of E39 Actor. E4 Period is a subclass of E2 Temporal Entity and of E92 Spacetime Volume. The latter is intended as a phenomenal spacetime volume as defined in CIDOC CRMgeo (Doerr & Hiebel, 2013). By virtue of this multiple inheritance, it is possible to discuss the physical extent of an instance of E4 Period without representing each instance of it together with an instance of its associated spacetime volume. This model combines two quite different kinds of substance: an instance of E4 Period is a phenomenon while an instance of E92 Spacetime Volume is an aggregation of points in spacetime. However, the real spatiotemporal extent of an instance of E4 Period is regarded to be unique to it due to all its details and fuzziness; its identity and existence depends uniquely on the identity of the instance of E4 Period. Therefore, this multiple inheritance is unambiguous and effective and furthermore corresponds to the intuitions of natural language. Typical use of this class in cultural heritage documentation is for documenting cultural and artistic periods. There are two different conceptualisations of ‘artistic style’, defined either by physical features or by historical context. For example, “Impressionism” can be viewed as a period in the European sphere of influence lasting from approximately 1870 to 1905 during which paintings with particular characteristics were produced by a group of artists that included (among others) Monet, Renoir, Pissarro, Sisley and Degas. Alternatively, it can be regarded as a style applicable to all paintings sharing the characteristics of the works produced by the Impressionist painters, regardless of historical context. The first interpretation is an instance of E4 Period, and the second defines morphological object types that fall under E55 Type. A geopolitical unit as a specific case of an instance of E4 Period is the set of activities and phenomena related to the claim of power, the consequences of belonging to a jurisdictional area and an administrative system that establishes a geopolitical unit. Examples from the modern period are countries or administrative areas of countries such as districts whose actions and structures define activities and phenomena in the area that they intend to govern. The borders of geopolitical units are often defined in contracts or treaties although they may deviate from the actual practice. The spatiotemporal properties of Geopolitical units can be modelled through the properties inherited from E92 Spacetime Volume. Another specific case of an instance of E4 Period is the actual extent of the set of activities and phenomena as evidenced by their physical traces that define a settlement, such as the populated period of Nineveh.

Super-classes crm:E92_Spacetime_Volumec
crm:E2_Temporal_Entityc
Sub-classes crm:E5_Eventc

E52 Time-Spanc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E52_Time-Span
Description

This class comprises abstract temporal extents, in the sense of Galilean physics, having a beginning, an end, and a duration. Instances of E52 Time-Span have no semantic connotations about phenomena happening within the temporal extent they represent. They do not convey any meaning other than a positioning on the “time-line” of chronology. The actual extent of an instance of E52 Time-Span can be approximated by properties of E52 Time-Span giving inner and outer bounds in the form of dates (instances of E61 Time Primitive). Comparing knowledge about time-spans is fundamental for chronological reasoning. Some instances of E52 Time-Span may be defined as the actual, in principle observable, temporal extent of instances of E2 Temporal Entity via the property P4 has time-span (is time-span of): E52 Time-Span. They constitute phenomenal time-spans as defined in CRMgeo (Doerr & Hiebel 2013). Since our knowledge of history is imperfect and physical phenomena are fuzzy in nature, the extent of phenomenal time-spans can only be described in approximation. An extreme case of approximation, might, for example, define an instance of E52 Time-Span having unknown beginning, end and duration. It may, nevertheless, be associated with other descriptions by which people can infer knowledge about it, such as in relative chronologies. Some instances of E52 may be defined precisely as representing a declaration of a temporal extent, as, for instance, done in a business contract. They constitute declarative time-spans as defined in CRMgeo (Doerr & Hiebel 2013) and can be described via the property E61 Time Primitive P170 defines time (time is defined by): E52 Time-Span. When used as a common E52 Time-Span for two events, it will nevertheless describe them as being simultaneous, even if nothing else is known.

Super-classes crm:E1_CRM_Entityc
Sub-classes Time Periodc

E53 Placec # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E53_Place
Description

This class comprises extents in the natural space where people live, in particular on the surface of the Earth, in the pure sense of physics: independent from temporal phenomena and matter. They may serve describing the physical location of things or phenomena or other areas of interest. Geometrically, instances of E53 Place constitute single contiguous areas or a finite aggregation of disjoint areas in space which are each individually contiguous. They may have fuzzy boundaries. The instances of E53 Place are usually determined by reference to the position of “immobile” objects such as buildings, cities, mountains, rivers, or dedicated geodetic marks, but may also be determined by reference to mobile objects. A Place can be determined by combining a frame of reference and a location with respect to this frame. It is sometimes argued that instances of E53 Place are best identified by global coordinates or absolute reference systems. However, relative references are often more relevant in the context of cultural documentation and tend to be more precise. In particular, people are often interested in position in relation to large, mobile objects, such as ships. For example, the Place at which Nelson died is known with reference to a large mobile object, i.e. H.M.S Victory. A resolution of this Place in terms of absolute coordinates would require knowledge of the movements of the vessel and the precise time of death, either of which may be revised, and the result would lack historical and cultural relevance. Any instance of E18 Physical Thing can serve as a frame of reference for an instance of E53 Place. This may be documented using the property P157 is at rest relative to (provides reference space for).

Super-classes pleiades:Placec
Sub-classes geosparql:SpatialObjectc
In domain of crm:P89_falls_withinop
In range of crm:P89_falls_withinop
crm:P53_has_former_or_current_locationop

E55 Typec # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E55_Type
Description

This class comprises concepts denoted by terms from thesauri and controlled vocabularies used to characterize and classify instances of CIDOC CRM classes. Instances of E55 Type represent concepts, in contrast to instances of E41 Appellation which are used to name instances of CIDOC CRM classes. E55 Type provides an interface to domain specific ontologies and thesauri. These can be represented in the CIDOC CRM as subclasses of E55 Type, forming hierarchies of terms, i.e. instances of E55 Type linked via P127 has broader term (has narrower term): E55 Type. Such hierarchies may be extended with additional properties.

Super-classes crm:E28_Conceptual_Objectc
Sub-classes skos:Conceptc
In range of crm:P2_has_typeop

E5 Eventc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E5_Event
Description

This class comprises distinct, delimited and coherent processes and interactions of a material nature, in cultural, social or physical systems, involving and affecting instances of E77 Persistent Item in a way characteristic of the kind of process. Typical examples are meetings, births, deaths, actions of decision taking, making or inventing things, but also more complex and extended ones such as conferences, elections, building of a castle, or battles. While the continuous growth of a tree lacks the limits characteristic of an event, its germination from a seed does qualify as an event. Similarly, the blowing of the wind lacks the distinctness and limits of an event, but a hurricane, flood or earthquake would qualify as an event. Mental processes are considered as events, in cases where they are connected with the material externalization of their results; for example, the creation of a poem, a performance or a change of intention that becomes obvious from subsequent actions or declarations. The effects of an instance of E5 Event may not lead to relevant permanent changes of properties or relations of the items involved in it, for example an unrecorded performance. Of course, in order to be documented, some kind of evidence for an event must exist, be it witnesses, traces or products of the event. While instances of E4 Period always require some form of coherence between its constituent phenomena, in addition, the essential constituents of instances of E5 Event should contribute to an overall effect; for example, the statements made during a meeting and the listening of the audience. Viewed at a coarse level of detail, an instance of E5 Event may appear as if it had an ‘instantaneous’ overall effect, but any process or interaction of material nature in reality have an extent in time and space. At a fine level, instances of E5 Event may be analysed into component phenomena and phases within a space and timeframe, and as such can be seen as a period, regardless of the size of the phenomena. The reverse is not necessarily the case: not all instances of E4 Period give rise to a noteworthy overall effect and are thus not instances of E5 Event.

Super-classes crm:E4_Periodc
Sub-classes prov:Activityc
In domain of crm:P12_occurred_in_the_presence_ofop

E65 Creationc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E65_Creation
Description

This class comprises events that result in the creation of conceptual items or immaterial products, such as legends, poems, texts, music, images, movies, laws, types, etc.

Super-classes crm:E7_Activityc

E70 Thingc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E70_Thing
Description

This general class comprises discrete, identifiable, instances of E77 Persistent Item that are documented as single units, that either consist of matter or depend on being carried by matter and are characterized by relative stability. They may be intellectual products or physical things. They may, for instance, have a solid physical form, an electronic encoding, or they may be a logical concept or structure.

Super-classes crm:E77_Persistent_Itemc
Sub-classes crm:E72_Legal_Objectc
crm:E71_Human-Made_Thingc

E71 Human-Made Thingc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E71_Human-Made_Thing
Description

This class comprises discrete, identifiable human-made items that are documented as single units. These items are either intellectual products or human-made physical things, and are characterized by relative stability. They may, for instance, have a solid physical form, an electronic encoding, or they may be logical concepts or structures.

Super-classes crm:E70_Thingc
Sub-classes crm:E28_Conceptual_Objectc

E72 Legal Objectc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E72_Legal_Object
Description

This class comprises those material or immaterial items to which instances of E30 Right, such as the right of ownership or use, can be applied. This is generally true for all instances of E18 Physical Thing. In the case of instances of E28 Conceptual Object, however, the identity of an instance of E28 Conceptual Object or the method of its use may be too ambiguous to reliably establish instances of E30 Right, as in the case of taxa and inspirations. Ownership of corporations is currently regarded as out of scope of the CIDOC CRM.

Super-classes crm:E70_Thingc
Sub-classes crm:E18_Physical_Thingc
crm:E90_Symbolic_Objectc

E73 Information Objectc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E73_Information_Object
Description

This class comprises identifiable immaterial items, such as poems, jokes, data sets, images, texts, multimedia objects, procedural prescriptions, computer program code, algorithm or mathematical formulae, that have an objectively recognizable structure and are documented as single units. The encoding structure known as a “named graph” also falls under this class, so that each “named graph” is an instance of E73 Information Object. An instance of E73 Information Object does not depend on a specific physical carrier, which can include human memory, and it can exist on one or more carriers simultaneously. Instances of E73 Information Object of a linguistic nature should be declared as instances of the E33 Linguistic Object subclass. Instances of E73 Information Object of a documentary nature should be declared as instances of the E31 Document subclass. Conceptual items such as types and classes are not instances of E73 Information Object, nor are ideas without a reproducible expression.

Super-classes crm:E90_Symbolic_Objectc
crm:E89_Propositional_Objectc
Sub-classes crm:E29_Design_or_Procedurec
crmdig:D1_Digital_Objectc
crm:E31_Documentc
In domain of has URLdp

E77 Persistent Itemc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E77_Persistent_Item
Description

This class comprises items that have persistent characteristics of structural nature substantially related to their identity and their integrity, sometimes known as “endurants” in philosophy. Persistent Items may be physical entities, such as people, animals or things, conceptual entities such as ideas, concepts, products of the imagination or even names. Instances of E77 Persistent Item may be present or be part of interactions in different periods or events. They can repeatedly be recognized at disparate occasions during their existence by characteristics of structural nature. The respective characteristics need not be exactly the same during all the existence of an instance of E77 Persistent Item. Often, they undergo gradual change, still bearing some similarities with that of previous times, or disappear completely and new emerge. For instance, a person, from the time of being born on, will gradually change all its features and acquire new ones, such as a scar. Even the DNA in different body cells will develop defects and mutations. Nevertheless, relevant characteristics used should be sufficiently similar to recognize the instance for some substantial period of time. The more specific criteria that determine the identity of instances of subclasses of E77 Persistent Item may vary considerably and are described or referred to in the respective scope notes. The decision about which exact criteria to use depends on whether the observable behaviour of the respective part of reality such confined conforms to the reasoning the user is interested in. For example, a building can be regarded as no longer existing if it is dismantled and the materials reused in a different configuration. On the other hand, human beings go through radical and profound changes during their life-span, affecting both material composition and form, yet preserve their identity by other criteria, such as being bodily separated from other persons. Similarly, inanimate objects may be subject to exchange of parts and matter. On the opposite, the identity of a (version of a) text of a scientific publication is given by the exact arrangement of its relevant symbols. The main classes of objects that fall outside the scope of the E77 Persistent Item class are temporal objects such as periods, events and acts, and descriptive properties. An instance of E77 Persistent Item does not require actual knowledge of the identifying features of the instance being currently known. There may be cases, where the actual identifying features of an instance of E77 Persistent Item are not decidable at a particular state of knowledge.

Super-classes crm:E1_CRM_Entityc
Sub-classes foaf:Agentc
crm:E70_Thingc
dct:Agentc
In range of crm:P12_occurred_in_the_presence_ofop

E7 Activityc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E7_Activity
Description

This class comprises actions intentionally carried out by instances of E39 Actor that result in changes of state in the cultural, social, or physical systems documented. This notion includes complex, composite, and long-lasting actions such as the building of a settlement or a war, as well as simple, short-lived actions such as the opening of a door.

Super-classes prov:Activityc
Sub-classes crm:E65_Creationc
Datingc
crm:E13_Attribute_Assignmentc
crm:E11_Modificationc

E89 Propositional Objectc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E89_Propositional_Object
Description

This class comprises immaterial items, including but not limited to stories, plots, procedural prescriptions, algorithms, laws of physics or images that are, or represent in some sense, sets of propositions about real or imaginary things and that are documented as single units or serve as topic of discourse. This class also comprises items that are “about” something in the sense of a subject. In the wider sense, this class includes expressions of psychological value such as non-figural art and musical themes. However, conceptual items such as types and classes are not instances of E89 Propositional Object. This should not be confused with the definition of a type, which is indeed an instance of E89 Propositional Object.

Super-classes crm:E28_Conceptual_Objectc
Sub-classes crm:E73_Information_Objectc
In domain of crm:P67_refers_toop

E90 Symbolic Objectc # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E90_Symbolic_Object
Description

This class comprises identifiable symbols and any aggregation of symbols, such as characters, identifiers, traffic signs, emblems, texts, data sets, images, musical scores, multimedia objects, computer program code, or mathematical formulae that have an objectively recognizable structure and that are documented as single units. It includes sets of signs of any nature, which may serve to designate something, or to communicate some propositional content. An instance of E90 Symbolic Object may or may not have a specific meaning, for example an arbitrary character string. In some cases, the content of an instance of E90 Symbolic Object may completely be represented by a serialized digital content model, such as a sequence of ASCII-encoded characters, an XML or HTML document, or a TIFF image. The property P3 has note and its subproperty P190 has symbolic content allow for the description of this content model. In order to disambiguate which symbolic level is the carrier of the meaning, the property P3.1 has type can be used to specify the encoding (e.g. “bit”, “Latin character”, RGB pixel).

Super-classes crm:E28_Conceptual_Objectc
crm:E72_Legal_Objectc
Sub-classes crm:E73_Information_Objectc

E92 Spacetime Volumec # Classes

URI http://www.cidoc-crm.org/cidoc-crm/E92_Spacetime_Volume
Description

This class comprises 4-dimensional point sets (volumes) in physical spacetime (in contrast to mathematical models of it) regardless of their true geometric forms. They may derive their identity from being the extent of a material phenomenon or from being the interpretation of an expression defining an extent in spacetime. Intersections of instances of E92 Spacetime Volume, E53 Place, and E52 Time-Span are also regarded as instances of E92 Spacetime Volume. An instance of E92 Spacetime Volume is either contiguous or composed of a finite number of contiguous subsets. Its boundaries may be fuzzy due to the properties of the phenomena it derives from or due to the limited precision up to which defining expression can be identified with a real extent in spacetime. The duration of existence of an instance of E92 Spacetime Volume is its projection on time.

Super-classes crm:E1_CRM_Entityc
Sub-classes crm:E4_Periodc

D10 Software Executionc # Classes

URI http://www.ics.forth.gr/isl/CRMdig/D10_Software_Execution
Description

his class comprises events by which a digital device runs a software program or a series of computing operations on a digital object as a single task, which is completely determined by its digital input, the software and the generic properties of the device.

Super-classes crmdig:D7_Digital_Machine_Eventc
Sub-classes Contamination Measurec

D1 Digital Objectc # Classes

URI http://www.ics.forth.gr/isl/CRMdig/D1_Digital_Object
Description

This class comprises identifiable immaterial items that can be represented as sets of bit sequences, such as data sets, e-texts, images, audio or video items, software, etc., and are documented as single units. Any aggregation of instances of D1 Digital Object into a whole treated as single unit is also regarded as an instance of D1 Digital Object. This means that for instance, the content of a DVD, an XML file on it, and an element of this file, are regarded as distinct instances of D1 Digital Object, mutually related by the P106 is composed of (forms part of) property. A D1 Digital Object does not depend on a specific physical carrier, and it can exist on one or more carriers simultaneously.

Super-classes crm:E73_Information_Objectc
Sub-classes Datasetc

D7 Digital Machine Eventc # Classes

URI http://www.ics.forth.gr/isl/CRMdig/D7_Digital_Machine_Event
Description

This class comprises events that happen on physical digital devices following a human activity that intentionally caused its immediate or delayed initiation and results in the creation of a new instance of D1 Digital Object on behalf of the human actor. The input of a D7 Digital Machine Event may be parameter settings and/or data to be processed. Some D7 Digital Machine Events may form part of a wider E65 Creation event. In this case, all machine output of the partial events is regarded as creation of the overall activity.

Super-classes crm:E11_Modificationc
Sub-classes crmdig:D10_Software_Executionc

GeoSPARQL Featurec # Classes

URI http://www.opengis.net/ont/geosparql#Feature
Description

A discrete spatial phenomenon in a universe of discourse.

Super-classes geosparql:SpatialObjectc
In domain of geosparql:hasGeometryop
has representative pointop
lado:PlaceOfInterestop

GeoSPARQL Geometryc # Classes

URI http://www.opengis.net/ont/geosparql#Geometry
Description

A coherent set of direct positions in space. The positions are held within a Spatial Reference System (SRS).

Super-classes geosparql:SpatialObjectc
Sub-classes sf:Geometryc
In domain of geosparql:hasSerializationdp
In range of geosparql:hasGeometryop
has representative pointop
lado:PlaceOfInterestop

GeoSPARQL Spatial Objectc # Classes

URI http://www.opengis.net/ont/geosparql#SpatialObject
Description

Anything spatial (being or having a shape, position or an extent).

Super-classes crm:E53_Placec
Sub-classes pleiades:Locationc
geosparql:Geometryc
geosparql:Featurec
In domain of geosparql:asGeoJSONdp
geosparql:asWKTdp

SF Geometryc # Classes

URI http://www.opengis.net/ont/sf#Geometry
Description

Geometry is the root class of the hierarchy.

The instantiable subclasses of Geometry are restricted to 0, 1 and 2-dimensional geometric objects that exist in 2, 3 or 4-dimensional coordinate space (R2, R3 or R4). Geometry values in R2 have points with coordinate values for x and y. Geometry values in R3 have points with coordinate values for x, y and z or for x, y and m. Geometry values in R4 have points with coordinate values for x, y, z and m.

The interpretation of the coordinates is subject to the coordinate reference systems associated to the point. All coordinates within a geometry object should be in the same coordinate reference systems. Each coordinate shall be unambiguously associated to a coordinate reference system either directly or through its containing geometry. The z coordinate of a point is typically, but not necessarily, represents altitude or elevation. The m coordinate represents a measurement.

All Geometry classes described in this specification are defined so that instances of Geometry are topologically closed, i.e. all represented geometries include their boundary as point sets. This does not affect their representation, and open versions of the same classes may be used in other circumstances, such as topological representations.

Super-classes geosparql:Geometryc
Sub-classes sf:Pointc

SF Pointc # Classes

URI http://www.opengis.net/ont/sf#Point
Description

A Point is a 0-dimensional geometric object and represents a single location in coordinate space. A Point has an x-coordinate value, a y-coordinate value. If called for by the associated Spatial Reference System, it may also have coordinate values for z and m. The boundary of a Point is the empty set.

Super-classes sf:Geometryc

Conceptc # Classes

URI http://www.w3.org/2004/02/skos/core#Concept
Super-classes crm:E55_Typec
Sub-classes Genotype Ploidyc
Dating Typec
UDG Treatmentc
Library Strandednessc
Genetic Source Accessionc
Source Tissue Typec
Capture Typec
obo:GSSO_000114c
External Identifier Typec

TIME Instantc # Classes

URI http://www.w3.org/2006/time#Instant
Description

A temporal entity with zero extent or duration

Super-classes time:TemporalEntityc
In domain of time:inXSDgYeardp
In range of time:hasEndop
has medianop
time:hasBeginningop
published in yearop

TIME Intervalc # Classes

URI http://www.w3.org/2006/time#Interval
Description

A temporal entity with an extent or duration

Super-classes time:TemporalEntityc
Sub-classes Time Periodc
In domain of edtf:hasEDTFDateTimeDescriptiondp

TIME Temporal Entityc # Classes

URI http://www.w3.org/2006/time#TemporalEntity
Description

A temporal interval or instant.

Super-classes crm:E1_CRM_Entityc
Sub-classes time:Instantc
time:Intervalc
In domain of has medianop
time:hasEndop
time:hasBeginningop
In range of time:hasTimeop

PROV-O Activityc # Classes

URI http://www.w3.org/ns/prov#Activity
Super-classes crm:E5_Eventc
Sub-classes crm:E7_Activityc
In domain of prov:wasAssociatedWithop
prov:startedAtTimedp
prov:wasInformedByop
prov:endedAtTimedp
prov:usedop
In range of prov:wasInformedByop
prov:wasGeneratedByop

PROV-O Agentc # Classes

URI http://www.w3.org/ns/prov#Agent
Super-classes foaf:Agentc
Sub-classes crm:E39_Actorc
In domain of prov:actedOnBehalfOfop
In range of prov:actedOnBehalfOfop
prov:wasAssociatedWithop
prov:wasAttributedToop
Members orcid:0009-0005-1140-3352
orcid:0000-0002-3246-3531
www:SoftwareSourceCode_Poseidon_LOD

PROV-O Entityc # Classes

URI http://www.w3.org/ns/prov#Entity
Super-classes https://www.w3.org/2000/01/rdf-schema#Resourcec
Sub-classes schema:Thingc
In domain of prov:wasAttributedToop
prov:wasGeneratedByop
prov:wasDerivedFromop
In range of prov:usedop
prov:wasDerivedFromop

PROV-O Organizationc # Classes

URI http://www.w3.org/ns/prov#Organization
Super-classes foaf:Organizationc

PROV-O Personc # Classes

URI http://www.w3.org/ns/prov#Person
Super-classes foaf:Personc
Sub-classes crm:E21_Personc

PROV-O Software Agentc # Classes

URI http://www.w3.org/ns/prov#SoftwareAgent
Super-classes crm:E39_Actorc
Sub-classes schema:SoftwareApplicationc

FOAF Agentc # Classes

URI http://xmlns.com/foaf/0.1/Agent
Description

An agent (eg. person, group, software or physical artifact).

Super-classes crm:E77_Persistent_Itemc
Sub-classes prov:Agentc
In domain of foaf:namedp

FOAF Organizationc # Classes

URI http://xmlns.com/foaf/0.1/Organization
Description

An organization.

Super-classes crm:E39_Actorc
Sub-classes prov:Organizationc

FOAF Personc # Classes

URI http://xmlns.com/foaf/0.1/Person
Description

A person.

Super-classes crm:E39_Actorc
Sub-classes prov:Personc

Pleiades Locationc # Classes

URI https://pleiades.stoa.org/places/vocab#Location
Super-classes geosparql:SpatialObjectc
crm:E27_Sitec
Sub-classes lado:Locationc
Sitec
Discovery Sitec

Pleiades Placec # Classes

URI https://pleiades.stoa.org/places/vocab#Place
Description

Places are instances of skos:Concept as well as contexts for Locations and Names.

Super-classes crm:E1_CRM_Entityc
Sub-classes lado:Placec
crm:E53_Placec

Resourcec # Classes

URI https://www.w3.org/2000/01/rdf-schema#Resource
Sub-classes prov:Entityc
In range of external identifierop

Object Properties

place of interestop # OPs

URI http://archaeology.link/ontology#PlaceOfInterest
Description

c.f. https://www.ogc.org/standards/geosparql, 1.0, OGC GeoSPARQL - A Geographic Query Language for RDF Data, 11-052r4, Annex B, B.1

Super-properties geosparql:hasGeometryop
Domain(s) geosparql:Featurec
Range(s) geosparql:Geometryc

has entityop # OPs

URI http://archaeology.link/ontology#hasEntity
Domain(s) lado:Actorc
Range(s) lado:ActorEntityc

has locationop # OPs

URI http://archaeology.link/ontology#hasLocation
Domain(s) lado:Placec
Range(s) lado:Locationc

interacts withop # OPs

URI http://archaeology.link/ontology#interactsWith
Domain(s) lado:ActorEntityc
Range(s) lado:ActorEntityc

at placeop # OPs

URI http://archaeonatural.cloud/ont/atPlace
Description

place a site is located in

Super-properties owl:topObjectProperty
Domain(s) Sitec
Range(s) www:Placec

at siteop # OPs

URI http://archaeonatural.cloud/ont/atSite
Description

site a sample site is located in

Super-properties crm:P89_falls_withinop
Domain(s) Discovery Sitec
Range(s) www:Sitec

close matchop # OPs

URI http://archaeonatural.cloud/ont/closeMatch
Description

Matches nodes in the created namespace to nodes from other terminologies

Super-properties skos:closeMatchop
Domain(s) owl:Thingc
Range(s) owl:Thingc

dated byop # OPs

URI http://archaeonatural.cloud/ont/datedBy
Description

relates a biological sample to the dating event resulting from its dating process

Domain(s) Biological Samplec
Range(s) www:Datingc

dating informationop # OPs

URI http://archaeonatural.cloud/ont/datingInformation
Description

information assigned to a dating activity

Domain(s) Datingc
Range(s) owl:Thingc

external identifierop # OPs

URI http://archaeonatural.cloud/ont/externalIdentifier
Description

links a node to a resource in the LOD cloud

Domain(s) owl:Thingc
Range(s) https://www.w3.org/2000/01/rdf-schema#Resourcec

found at disovery siteop # OPs

URI http://archaeonatural.cloud/ont/foundAtDiscoverySite
Description

discovery site where a sample was found

Super-properties crm:P53_has_former_or_current_locationop
Domain(s) Samplec
Range(s) www:DiscoverySitec

from genetic source accessionop # OPs

URI http://archaeonatural.cloud/ont/fromGeneticSourceAccession
Description

links a sample with the source data used to generate its genotyping data

Super-properties crm:P2_has_typeop
Domain(s) ancient DNA Samplec
Range(s) www:GeneticSourceAccessionc

has capture typeop # OPs

URI http://archaeonatural.cloud/ont/hasCaptureType
Description

capture type associated with an aDNA sample

Super-properties crm:P2_has_typeop
Domain(s) ancient DNA Samplec
Range(s) www:CaptureTypec

has DOIop # OPs

URI http://archaeonatural.cloud/ont/hasDOI
Description

the DOI allowing to identify a document

Domain(s) Literaturec
Range(s) owl:Thingc

has dating typeop # OPs

URI http://archaeonatural.cloud/ont/hasDatingType
Description

the dating type that a dating is of

Super-properties crm:P2_has_typeop dating informationop
Domain(s) Datingc
Range(s) www:DatingTypec

has genetic sexop # OPs

URI http://archaeonatural.cloud/ont/hasGeneticSex
Description

genetic sex of the person an biological sample is taken from

Super-properties crm:P2_has_typeop
Domain(s) Biological Samplec
Range(s) www:GeneticSexc

has genotype ploidyop # OPs

URI http://archaeonatural.cloud/ont/hasGenotypePloidy
Description

genotype ploidy associated with an aDNA sample

Super-properties crm:P2_has_typeop
Domain(s) ancient DNA Samplec
Range(s) www:GenotypePloidyc

has library strandednessop # OPs

URI http://archaeonatural.cloud/ont/hasLibraryStrandedness
Description

strandedness of the library of an aDNA sample

Super-properties crm:P2_has_typeop
Domain(s) ancient DNA Samplec
Range(s) www:LibraryStrandednessc

has medianop # OPs

URI http://archaeonatural.cloud/ont/hasMedian
Description

Median of a temporal entity.

Super-properties owl:topObjectProperty
Domain(s) time:TemporalEntityc
Range(s) time:Instantc

has ORCIDop # OPs

URI http://archaeonatural.cloud/ont/hasORCID
Description

the ORCID ID allowing to identify an author

Domain(s) Personc
Range(s) owl:Thingc

has primary contactop # OPs

URI http://archaeonatural.cloud/ont/hasPrimaryContact
Description

relates an aDNA sample to the person responsible for it

Super-properties crm:P50_has_current_keeperop
Domain(s) ancient DNA Samplec
Range(s) www:Personc

has representative pointop # OPs

URI http://archaeonatural.cloud/ont/hasRepresentativePoint
Description

connects a spatial object to its representative point, might be an averaged representation for higher-level concepts

Super-properties lado:PlaceOfInterestop
Domain(s) geosparql:Featurec
Range(s) geosparql:Geometryc

has source tissue typeop # OPs

URI http://archaeonatural.cloud/ont/hasSourceTissueType
Description

relates a source tissue to the respective material type it is made of

Super-properties crm:P2_has_typeop
Domain(s) Source Tissuec
Range(s) www:SourceTissueTypec

has UDG treatmentop # OPs

URI http://archaeonatural.cloud/ont/hasUDGTreatment
Description

the UDG treatment associated with an aDNA sample

Super-properties crm:P2_has_typeop
Domain(s) ancient DNA Samplec
Range(s) www:UDGTreatmentc

in countryop # OPs

URI http://archaeonatural.cloud/ont/inCountry
Description

country a location is located in

Super-properties owl:topObjectProperty
Domain(s) Placec
Range(s) www:Countryc

in journalop # OPs

URI http://archaeonatural.cloud/ont/inJournal
Description

links a literature publication event to the journal it is published in

Super-properties dct:isPartOfop
Domain(s) Literaturec
Range(s) www:Journalc

measured contaminationop # OPs

URI http://archaeonatural.cloud/ont/measuredContamination
Description

measured contamination of a sample

Super-properties crm:P39_measuredop
Domain(s) Contaminationc
Range(s) www:Samplec

measured haplogroupop # OPs

URI http://archaeonatural.cloud/ont/measuredHaplogroup
Description

the measured haplogroup of an aDNA sample

Super-properties crm:P39_measuredop
Domain(s) Haplogroup Measurementc
Range(s) www:aDNASamplec

measured MT-haplogroupop # OPs

URI http://archaeonatural.cloud/ont/measuredMTHaplogroup
Description

the measured MT-haplogroup of an aDNA sample

Super-properties measured haplogroupop
Domain(s) MT-Haplogroup Measurementc
Range(s) www:aDNASamplec

measured Y-haplogroupop # OPs

URI http://archaeonatural.cloud/ont/measuredYHaplogroup
Description

the measured Y-haplogroup of an aDNA sample

Super-properties measured haplogroupop
Domain(s) Y-Haplogroup Measurementc
Range(s) www:aDNASamplec

observed time periodop # OPs

URI http://archaeonatural.cloud/ont/observedTimePeriod
Description

the time period observed by a dating process

Super-properties dating informationop time:hasTimeop
Domain(s) Datingc
Range(s) www:TimePeriodc

of source tissueop # OPs

URI http://archaeonatural.cloud/ont/ofSourceTissue
Description

the source tissue (material) that a biological sample is of

Domain(s) Biological Samplec
Range(s) www:SourceTissuec

part of genetic source accessionop # OPs

URI http://archaeonatural.cloud/ont/partOfGeneticSourceAccession
Description

links genetic source accessions in case multiples are given arranged by descending specificity (e.g. project id > sample id > sequencing run id)

Super-properties dct:isPartOfop
Domain(s) Genetic Source Accessionc
Range(s) www:GeneticSourceAccessionc

part of genomic libraryop # OPs

URI http://archaeonatural.cloud/ont/partOfGenomicLibrary
Description

relates an aDNA sample with the genomic library is it part of

Super-properties dct:isPartOfop crm:P46i_forms_part_ofop
Domain(s) ancient DNA Samplec
Range(s) www:GenomicLibraryc

part of groupop # OPs

URI http://archaeonatural.cloud/ont/partOfGroup
Description

relates a sample to its population/group

Super-properties dct:isPartOfop
Domain(s) Samplec
Range(s) www:Groupc

prepared by preparation pipelineop # OPs

URI http://archaeonatural.cloud/ont/preparedByPreparationPipeline
Description

realtes an aDNA sample with the computational pipeline used to create it

Domain(s) ancient DNA Samplec
Range(s) www:PreparationPipelinec

published in yearop # OPs

URI http://archaeonatural.cloud/ont/publishedInYear
Description

Connects a publication to the year it was published

Domain(s) Literaturec
Range(s) time:Instantc

published sampleop # OPs

URI http://archaeonatural.cloud/ont/publishedSample
Description

links a literature to samples that are published by it

Super-properties crm:P70_documentsop
Domain(s) Literaturec
Range(s) www:Samplec

related by aDNA sampleop # OPs

URI http://archaeonatural.cloud/ont/relatedByaDNASample
Description

this property is used to finish the connection between two aDNA samples using the Reification Class aDNASampleRelation

Domain(s) aDNA sample relationc
Range(s) www:aDNASamplec

relates to aDNA sampleop # OPs

URI http://archaeonatural.cloud/ont/relatesToaDNASample
Description

relates an aDNA sample to other samples that are related/identical to this sample since the object property itself cannot be associated with attributes, a Reification Class "aDNASampleRelation" is used to store them

Domain(s) ancient DNA Samplec
Range(s) www:aDNASampleRelationc

used contamination measureop # OPs

URI http://archaeonatural.cloud/ont/usedContaminationMeasure
Description

relates a contamination measurement event to the used contamination measure

Super-properties owl:topObjectProperty
Domain(s) Contaminationc
Range(s) www:ContaminationMeasurec

written byop # OPs

URI http://archaeonatural.cloud/ont/writtenBy
Description

relates a literature to its author

Super-properties dct:creatorop
Domain(s) Literaturec
Range(s) www:Personc

Creatorop # OPs

URI http://purl.org/dc/terms/creator
Description

An entity responsible for making the resource.

Range(s) dct:Agentc

Is Part Ofop # OPs

URI http://purl.org/dc/terms/isPartOf
Description

A related resource in which the described resource is physically or logically included.

Domain(s) owl:Thingc
Range(s) owl:Thingc

occurred in the presence ofop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P12_occurred_in_the_presence_of
Description

This property describes the active or passive presence of an E77 Persistent Item in an instance of E5 Event without implying any specific role. It documents known events in which an instance of E77 Persistent Item was present during the course of its life or history. For example, an object may be the desk, now in a museum, on which a treaty was signed. The instance of E53 Place and the instance of E52 Time-Span where and when these events happened provide constraints about the presence of the related instance E77 Persistent Item in the past. Instances of E90 Symbolic Object, in particular information objects, are physically present in events via at least one of the instances of E18 Physical Thing carrying them. Note, that the human mind can be such a carrier. A precondition for a transfer of information to a person or another new physical carrier is the presence of the respective information object and this person or physical thing in one event.

Domain(s) crm:E5_Eventc
Range(s) crm:E77_Persistent_Itemc

assigned attribute toop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P140_assigned_attribute_to
Description

This property associates an instance of E13 Attribute Assignment with the instance of E1 CRM Entity about which it made an attribution. The instance of E1 CRM Entity plays the role of the domain of the attribution. The kind of attribution made should be documented using P177 assigned property of type (is type of property assigned).

Domain(s) crm:E13_Attribute_Assignmentc
Range(s) crm:E1_CRM_Entityc

has typeop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P2_has_type
Description

This property allows sub-typing of CIDOC CRM entities –a form of specialisation – through the use of a terminological hierarchy, or thesaurus. The CIDOC CRM is intended to focus on the high-level entities and relationships needed to describe data structures. Consequently, it does not specialise entities any further than is required for this immediate purpose. However, entities in the isA hierarchy of the CIDOC CRM may by specialised into any number of sub-entities, which can be defined in the E55 Type hierarchy. E41 Appellation, for example, may be specialised into “e-mail address”, “telephone number”, “post office box”, “URL”, etc., none of which figures explicitly in the CIDOC CRM class hierarchy. A comprehensive explanation about refining CIDOC CRM concepts by E55 Type is given in the section “About Types” in the section on “Specific Modelling Constructs” of this document. This property is a shortcut for the path from E1 CRM Entity through P41i was classified by, E17 Type Assignment, P42 assigned to E55 Type.

Domain(s) crm:E1_CRM_Entityc
Range(s) crm:E55_Typec

measuredop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P39_measured
Description

This property associates an instance of E16 Measurement with the instance of E18 Physical Thing upon which it acted. The instance of E16 Measurement is specific to the measured object. An instance of E18 Physical Thing may be measured more than once with different results, constituting different instances of E16 Measurement.

Super-properties crm:P140_assigned_attribute_toop
Domain(s) crm:E16_Measurementc
Range(s) crm:E18_Physical_Thingc

is composed ofop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P46_is_composed_of
Description

This property associates an instance of E18 Physical Thing with another instance of Physical Thing that forms part of it. The spatial extent of the composing part is included in the spatial extent of the whole. Component elements, since they are themselves instances of E18 Physical Thing, may be further analysed into sub-components, thereby creating a hierarchy of part decomposition. An instance of E18 Physical Thing may be shared between multiple wholes, for example two buildings may share a common wall. This property does not specify when and for how long a component element resided in the respective whole. If a component is not part of a whole from the beginning of existence or until the end of existence of the whole, the classes E79 Part Addition and E90 Part Removal can be used to document when a component became part of a particular whole and/or when it stopped being a part of it. For the time-span of being part of the respective whole, the component is completely contained in the place the whole occupies. This property is intended to describe specific components that are individually documented, rather than general aspects. Overall descriptions of the structure of an instance of E18 Physical Thing are captured by the P3 has note property. The instances of E57 Material of which an instance of E18 Physical Thing is composed should be documented using P45 consists of (is incorporated in). This property is transitive and asymmetric.

Inverse properties crm:P46i_forms_part_ofop
Domain(s) crm:E18_Physical_Thingc
Range(s) crm:E18_Physical_Thingc

forms part ofop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P46i_forms_part_of
Domain(s) crm:E18_Physical_Thingc
Range(s) crm:E18_Physical_Thingc

has former or current keeperop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P49_has_former_or_current_keeper
Description

This property identifies the instance of E39 Actor who has or has had custody of an instance of E18 Physical Thing at some time. This property leaves open the question if parts of this physical thing have been added or removed during the time-spans it has been under the custody of this actor, but it is required that at least a part which can unambiguously be identified as representing the whole has been under this custody for its whole time. The way, in which a representative part is defined, should ensure that it is unambiguous who keeps a part and who the whole and should be consistent with the identity criteria of the kept instance of E18 Physical Thing. The distinction with P50 has current keeper (is current keeper of) is that P49 has former or current keeper (is former or current keeper of) leaves open the question as to whether the specified keepers are current. This property is a shortcut for the more detailed path from E18 Physical Thing through P30i custody transferred through, E10 Transfer of Custody, P28 custody surrendered by or P29 custody received by to E39 Actor.

Domain(s) crm:E18_Physical_Thingc
Range(s) crm:E39_Actorc

has current keeperop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P50_has_current_keeper
Description

This property identifies the instance of E39 Actor that had custody of an instance of E18 Physical Thing at the time of validity of the record or database containing the statement that uses this property. This property is a shortcut for the more detailed path from E18 Physical Thing through, P30i custody transferred through, E10 Transfer of Custody, P29 custody received by to E39 Actor, if and only if the custody has not been surrendered by the receiving actor at any later time

Super-properties crm:P49_has_former_or_current_keeperop
Domain(s) crm:E18_Physical_Thingc
Range(s) crm:E39_Actorc

has former or current locationop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P53_has_former_or_current_location
Description

This property identifies an instance of E53 Place as the former or current location of an instance of E18 Physical Thing. In the case of instances of E19 Physical Object, the property does not allow any indication of the Time-Span during which the instance of E19 Physical Object was located at this instance of E53 Place, nor if this is the current location. In the case of immobile objects, the Place would normally correspond to the Place of creation. This property is a shortcut. A more detailed representation can make use of the fully developed (i.e. indirect) path from E19 Physical Object, though, P25i moved by, E9 Move, P26 moved to or P27 moved from to E53 Place.

Domain(s) crm:E18_Physical_Thingc
Range(s) crm:E53_Placec

refers toop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P67_refers_to
Description

This property documents that an instance of E89 Propositional Object makes a statement about an instance of E1 CRM Entity. P67 refers to (is referred to by) has the P67.1 has type link to an instance of E55 Type. This is intended to allow a more detailed description of the type of reference. This differs from P129 is about (is subject of), which describes the primary subject or subjects of the instance of E89 Propositional Object.

Domain(s) crm:E89_Propositional_Objectc
Range(s) crm:E1_CRM_Entityc

documentsop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P70_documents
Description

This property describes the CRM Entities documented as instances of E31 Document. Documents may describe any conceivable entity, hence the link to the highest-level entity in the CIDOC CRM class hierarchy. This property is intended for cases where a reference is regarded as making a proposition about reality. This may be of a documentary character, in the scholarly or scientific sense, or a more general statement.

Super-properties crm:P67_refers_toop

falls withinop # OPs

URI http://www.cidoc-crm.org/cidoc-crm/P89_falls_within
Description

This property identifies an instance of E53 Place that falls wholly within the extent of another instance of E53 Place. It addresses spatial containment only and does not imply any relationship between things or phenomena occupying these places. This property is transitive and reflexive.

Domain(s) crm:E53_Placec
Range(s) crm:E53_Placec

has geometryop # OPs

URI http://www.opengis.net/ont/geosparql#hasGeometry
Description

A spatial representation for a given Feature.

Domain(s) geosparql:Featurec
Range(s) geosparql:Geometryc

Has close matchop # OPs

URI http://www.w3.org/2004/02/skos/core#closeMatch
Description

Skos:closeMatch is used to link two concepts that are sufficiently similar that they can be used interchangeably in some information retrieval applications. In order to avoid the possibility of "compound errors" when combining mappings across more than two concept schemes, skos:closeMatch is not declared to be a transitive property.

Domain(s) owl:Thingc
Range(s) owl:Thingc

has beginningop # OPs

URI http://www.w3.org/2006/time#hasBeginning
Description

Beginning of a temporal entity.

Super-properties owl:topObjectProperty
Domain(s) time:TemporalEntityc
Range(s) time:Instantc

has endop # OPs

URI http://www.w3.org/2006/time#hasEnd
Description

End of a temporal entity.

Domain(s) time:TemporalEntityc
Range(s) time:Instantc

has timeop # OPs

URI http://www.w3.org/2006/time#hasTime
Description

Supports the association of a temporal entity (instant or interval) to any thing.

Domain(s) owl:Thingc
Range(s) time:TemporalEntityc

acted on behalf ofop # OPs

URI http://www.w3.org/ns/prov#actedOnBehalfOf
Description

Delegation is the assignment of authority and responsibility to an agent (by itself or by another agent) to carry out a specific activity as a delegate or representative, while the agent it acts on behalf of retains some responsibility for the outcome of the delegated work. For example, a student acted on behalf of his supervisor, who acted on behalf of the department chair, who acted on behalf of the university; all those agents are responsible in some way for the activity that took place but we do not say explicitly who bears responsibility and to what degree.

Domain(s) prov:Agentc
Range(s) prov:Agentc

usedop # OPs

URI http://www.w3.org/ns/prov#used
Domain(s) prov:Activityc
Range(s) prov:Entityc

was associated withop # OPs

URI http://www.w3.org/ns/prov#wasAssociatedWith
Description

An activity association is an assignment of responsibility to an agent for an activity, indicating that the agent had a role in the activity. It further allows for a plan to be specified, which is the plan intended by the agent to achieve some goals in the context of this activity.

Super-properties crm:P12_occurred_in_the_presence_ofop
Domain(s) prov:Activityc
Range(s) prov:Agentc

was attributed toop # OPs

URI http://www.w3.org/ns/prov#wasAttributedTo
Description

Attribution is the ascribing of an entity to an agent.

Domain(s) prov:Entityc
Range(s) prov:Agentc

was derived fromop # OPs

URI http://www.w3.org/ns/prov#wasDerivedFrom
Description

A derivation is a transformation of an entity into another, an update of an entity resulting in a new one, or the construction of a new entity based on a pre-existing entity.

Domain(s) prov:Entityc
Range(s) prov:Entityc

was generated byop # OPs

URI http://www.w3.org/ns/prov#wasGeneratedBy
Description

Generation is the completion of production of a new entity by an activity. This entity did not exist before generation and becomes available for usage after this generation.

Domain(s) prov:Entityc
Range(s) prov:Activityc

was informed byop # OPs

URI http://www.w3.org/ns/prov#wasInformedBy
Description

Communication is the exchange of an entity by two activities, one activity using the entity generated by the other.

Domain(s) prov:Activityc
Range(s) prov:Activityc

Datatype Properties

c14 dating informationdp # DPs

URI http://archaeonatural.cloud/ont/C14DatingInformation
Description

information related to a C14 dating

Domain(s) C14 Datingc
Range(s) rdfs:Literalc

aDNA sample relationship propertiesdp # DPs

URI http://archaeonatural.cloud/ont/aDNASampleRelationshipProperties
Description

properties of the node type created to represent an attributed relationship between two aDNA samples

Domain(s) aDNA sample relationc
Range(s) xsd:stringc

has alternative IDdp # DPs

URI http://archaeonatural.cloud/ont/hasAlternativeID
Description

alternative identifiers of an object, e.g., in other systems

Super-properties identified bydp
Domain(s) owl:Thingc
Range(s) xsd:stringc

has collection IDdp # DPs

URI http://archaeonatural.cloud/ont/hasCollectionID
Description

alternative identifier shared by the provider/owner of the data (in the original collection)

Super-properties identified bydp
Domain(s) Samplec
Range(s) xsd:stringc

has contamination errordp # DPs

URI http://archaeonatural.cloud/ont/hasContaminationError
Description

(modern) contamination estimate error of the sample

Super-properties has errordp
Domain(s) Contaminationc
Range(s) xsd:decimalc

has dating errordp # DPs

URI http://archaeonatural.cloud/ont/hasDatingError
Description

a dating error considering the Uncalibrated Dating

Super-properties has errordp c14 dating informationdp
Domain(s) C14 Datingc
Range(s) xsd:integerc

has errordp # DPs

URI http://archaeonatural.cloud/ont/hasError
Description

quantified error of a measurement

Domain(s) crm:E1_CRM_Entityc
Range(s) rdfs:Literalc

has IDdp # DPs

URI http://archaeonatural.cloud/ont/hasID
Description

the ID (identifier) given to identify an object

Super-properties identified bydp
Domain(s) owl:Thingc

has ISO codedp # DPs

URI http://archaeonatural.cloud/ont/hasISOCode
Description

the ISO 3166 code allowing to identify a country

Super-properties identified bydp
Domain(s) Countryc
Range(s) xsd:stringc

has keyworddp # DPs

URI http://archaeonatural.cloud/ont/hasKeyword
Description

keyword to specify an object

Super-properties owl:topDataProperty
Domain(s) crm:E20_Biological_Objectc
Range(s) xsd:stringc

has lab numberdp # DPs

URI http://archaeonatural.cloud/ont/hasLabNumber
Description

the lab number lab numbers of a measurement allowing to identify it and the applied processes

Super-properties c14 dating informationdp
Domain(s) C14 Datingc
Range(s) xsd:stringc

has labeldp # DPs

URI http://archaeonatural.cloud/ont/hasLabel
Description

label/name of an object

Super-properties owl:topDataProperty
Domain(s) owl:Thingc
Range(s) xsd:stringc

has library countdp # DPs

URI http://archaeonatural.cloud/ont/hasLibraryCount
Description

relating the number of libraries produced for an aDNA sample to the respective sample

Super-properties sample measurementsdp
Domain(s) ancient DNA Samplec
Range(s) xsd:integerc

has notedp # DPs

URI http://archaeonatural.cloud/ont/hasNote
Description

any additional information

Super-properties crm:P3_has_notedp
Domain(s) crm:E1_CRM_Entityc
Range(s) xsd:stringc

has numeric valuedp # DPs

URI http://archaeonatural.cloud/ont/hasNumericValue
Description

a numeric measured value

Super-properties has valuedp
Domain(s) crm:E16_Measurementc
Range(s) xsd:decimalc

has relationship degreedp # DPs

URI http://archaeonatural.cloud/ont/hasRelationshipDegree
Description

adds a textual relationship degree to each aDNA sample relation

Super-properties aDNA sample relationship propertiesdp
Domain(s) aDNA sample relationc
Range(s) xsd:stringc

has relationship typedp # DPs

URI http://archaeonatural.cloud/ont/hasRelationshipType
Description

adds a textual relationship type to each aDNA sample relation

Super-properties aDNA sample relationship propertiesdp
Domain(s) aDNA sample relationc
Range(s) xsd:stringc

has SNP countdp # DPs

URI http://archaeonatural.cloud/ont/hasSNPCount
Description

number of non-missing SNPs to an aDNA sample

Super-properties sample measurementsdp
Domain(s) ancient DNA Samplec
Range(s) xsd:integerc

has textual valuedp # DPs

URI http://archaeonatural.cloud/ont/hasTextualValue
Description

a textual measured value

Super-properties has valuedp
Domain(s) crm:E16_Measurementc
Range(s) xsd:stringc

has titledp # DPs

URI http://archaeonatural.cloud/ont/hasTitle
Description

the title of a document

Super-properties has labeldp
Domain(s) Literaturec
Range(s) xsd:stringc

has URLdp # DPs

URI http://archaeonatural.cloud/ont/hasURL
Description

the URL where the information can be found

Super-properties has labeldp
Domain(s) crm:E73_Information_Objectc
Range(s) xsd:anyURIc

has uncalibrated datedp # DPs

URI http://archaeonatural.cloud/ont/hasUncalibratedDate
Description

an uncalibrated date in BP obtained by a dating process

Super-properties c14 dating informationdp
Domain(s) C14 Datingc
Range(s) xsd:integerc

has valuedp # DPs

URI http://archaeonatural.cloud/ont/hasValue
Description

any measured value

Super-properties owl:topDataProperty
Domain(s) crm:E16_Measurementc
Range(s) rdfs:Literalc

has versiondp # DPs

URI http://archaeonatural.cloud/ont/hasVersion
Description

Denotes the version of a dataset (package version in Poseidon)

Domain(s) Datasetc
Range(s) rdfs:Literalc

identified bydp # DPs

URI http://archaeonatural.cloud/ont/identifiedBy
Description

the unique value that identifies an object

Domain(s) owl:Thingc
Range(s) rdfs:Literalc

measured damagedp # DPs

URI http://archaeonatural.cloud/ont/measuredDamage
Description

measured % damage on the 5' end for the main shotgun library for an aDNA sample

Super-properties sample measurementsdp
Domain(s) ancient DNA Samplec
Range(s) xsd:decimalc

measured endogenous DNAdp # DPs

URI http://archaeonatural.cloud/ont/measuredEndogenousDNA
Description

measured % endogenous DNA for an aDNA sample

Super-properties sample measurementsdp
Domain(s) ancient DNA Samplec
Range(s) xsd:decimalc

measured SNP coveragedp # DPs

URI http://archaeonatural.cloud/ont/measuredSNPCoverage
Description

measured average X-fold coverage across targeted SNP sites for an aDNA sample

Super-properties sample measurementsdp
Domain(s) ancient DNA Samplec
Range(s) xsd:decimalc

sample measurementsdp # DPs

URI http://archaeonatural.cloud/ont/sample_measurements
Description

measured values for an (aDNA) sample

Domain(s) Samplec
Range(s) rdfs:Literalc

has notedp # DPs

URI http://www.cidoc-crm.org/cidoc-crm/P3_has_note
Description

This property is a container for all informal descriptions about an object that have not been expressed in terms of CIDOC CRM constructs. In particular, it captures the characterisation of the item itself, its internal structures, appearance, etc. Like property P2 has type (is type of), this property is a consequence of the restricted focus of the CIDOC CRM. The aim is not to capture, in a structured form, everything that can be said about an item; indeed, the CIDOC CRM formalism is not regarded as sufficient to express everything that can be said. Good practice requires use of distinct note fields for different aspects of a characterisation. The P3.1 has type property of P3 has note allows differentiation of specific notes, e.g. “construction”, “decoration”, etc. An item may have many notes, but a note is attached to a specific item.

Super-properties owl:topDataProperty
Domain(s) crm:E1_CRM_Entityc
Range(s) rdfs:Literalc

as GeoJSONdp # DPs

URI http://www.opengis.net/ont/geosparql#asGeoJSON
Super-properties geosparql:hasSerializationdp
Domain(s) geosparql:SpatialObjectc
Range(s) rdfs:Literalc

as WKTdp # DPs

URI http://www.opengis.net/ont/geosparql#asWKT
Super-properties geosparql:hasSerializationdp
Domain(s) geosparql:SpatialObjectc
Range(s) geosparql:WKTLiteralc

has serializationdp # DPs

URI http://www.opengis.net/ont/geosparql#hasSerialization
Description

Connects a Geometry object with its text-based serialization.

Domain(s) geosparql:Geometryc
Range(s) rdfs:Literalc

in XSD gYeardp # DPs

URI http://www.w3.org/2006/time#inXSDgYear
Description

Position of an instant, expressed using xsd:gYear

Domain(s) time:Instantc
Range(s) xsd:gYearc

ended at timedp # DPs

URI http://www.w3.org/ns/prov#endedAtTime
Description

End is when an activity is deemed to have been ended by an entity, known as trigger. The activity no longer exists after its end. Any usage, generation, or invalidation involving an activity precedes the activity's end. An end may refer to a trigger entity that terminated the activity, or to an activity, known as ender that generated the trigger.

Super-properties owl:topDataProperty
Domain(s) prov:Activityc
Range(s) xsd:dateTimec

started at timedp # DPs

URI http://www.w3.org/ns/prov#startedAtTime
Description

Start is when an activity is deemed to have been started by an entity, known as trigger. The activity did not exist before its start. Any usage, generation, or invalidation involving an activity follows the activity's start. A start may refer to a trigger entity that set off the activity, or to an activity, known as starter, that generated the trigger.

Super-properties owl:topDataProperty
Domain(s) prov:Activityc
Range(s) xsd:dateTimec

namedp # DPs

URI http://xmlns.com/foaf/0.1/name
Description

A name for some thing.

Super-properties has labeldp
Domain(s) foaf:Agentc
Range(s) xsd:stringc

has EDTF datetime descriptiondp # DPs

URI https://periodo.github.io/edtf-ontology/edtfo.ttl#hasEDTFDateTimeDescription
Description

Value of an interval, expressed using EDTF

Domain(s) time:Intervalc
Range(s) http://id.loc.gov/datatypes/edtf/EDTFc

Annotation Properties

version numberap # APs

URI http://archaeonatural.cloud/ont/version

contributorap # APs

URI http://purl.org/dc/elements/1.1/contributor

creatorap # APs

URI http://purl.org/dc/elements/1.1/creator

descriptionap # APs

URI http://purl.org/dc/elements/1.1/description

Identifierap # APs

URI http://purl.org/dc/elements/1.1/identifier
Description

Recommended best practice is to identify the resource by means of a string conforming to a formal identification system.

publisherap # APs

URI http://purl.org/dc/elements/1.1/publisher

rightsap # APs

URI http://purl.org/dc/elements/1.1/rights

subjectap # APs

URI http://purl.org/dc/elements/1.1/subject

contributorap # APs

URI http://purl.org/dc/terms/contributor

licenseap # APs

URI http://purl.org/dc/terms/license

rightsHolderap # APs

URI http://purl.org/dc/terms/rightsHolder

sourceap # APs

URI http://purl.org/dc/terms/source

typeap # APs

URI http://purl.org/dc/terms/type

typeap # APs

URI http://www.w3.org/1999/02/22-rdf-syntax-ns#type

alternative labelap # APs

URI http://www.w3.org/2004/02/skos/core#altLabel

definitionap # APs

URI http://www.w3.org/2004/02/skos/core#description

noteap # APs

URI http://www.w3.org/2004/02/skos/core#note
Description

note

Super-properties skos:scopeNoteap

preferred labelap # APs

URI http://www.w3.org/2004/02/skos/core#prefLabel

scope noteap # APs

URI http://www.w3.org/2004/02/skos/core#scopeNote

Named Individuals

ExternalIdentifier_Geonamesni

Class(es)
www:externalIdentifierType
URI http://archaeonatural.cloud/ExternalIdentifier_Geonames

ExternalIdentifier_Wikidatani

Class(es)
www:externalIdentifierType
URI http://archaeonatural.cloud/ExternalIdentifier_Wikidata

Femaleni

URI http://archaeonatural.cloud/ont/GeneticSex_Female
Same As schema:Female

Maleni

URI http://archaeonatural.cloud/ont/GeneticSex_Male
Same As schema:Male

Unknownni

URI http://archaeonatural.cloud/ont/GeneticSex_Unknown

diploidni

URI http://archaeonatural.cloud/ont/GenotypePloidy_diploid

haploidni

URI http://archaeonatural.cloud/ont/GenotypePloidy_haploid

dsni

URI http://archaeonatural.cloud/ont/LibraryStrandedness_ds

mixedni

URI http://archaeonatural.cloud/ont/LibraryStrandedness_mixed

otherni

URI http://archaeonatural.cloud/ont/LibraryStrandedness_other

ssni

URI http://archaeonatural.cloud/ont/LibraryStrandedness_ss

Poseidon_LOD.pyni

Class(es)
prov:Agent
schema:SoftwareSourceCode
URI http://archaeonatural.cloud/ont/SoftwareSourceCode_Poseidon_LOD

Hairni

URI http://archaeonatural.cloud/ont/SourceTissueType_Hair

Petrousni

URI http://archaeonatural.cloud/ont/SourceTissueType_Petrous

Toothni

URI http://archaeonatural.cloud/ont/SourceTissueType_Tooth

other boneni

URI http://archaeonatural.cloud/ont/SourceTissueType_otherBone

halfni

URI http://archaeonatural.cloud/ont/UDGTreatment_half

minusni

URI http://archaeonatural.cloud/ont/UDGTreatment_minus

mixedni

URI http://archaeonatural.cloud/ont/UDGTreatment_mixed

plusni

URI http://archaeonatural.cloud/ont/UDGTreatment_plus

Florian Thieryni

Class(es)
prov:Agent
www:Person
URI http://orcid.org/0000-0002-3246-3531

Mattis thor Stratenni

Class(es)
prov:Agent
www:Person
URI http://orcid.org/0009-0005-1140-3352

Femaleni

URI http://schema.org/Female

Maleni

URI http://schema.org/Male

Namespaces

default (:)
http://archaeonatural.cloud/ont/
bibo
http://purl.org/ontology/bibo/
brick
https://brickschema.org/schema/Brick#
crm
http://www.cidoc-crm.org/cidoc-crm/
crmdig
http://www.ics.forth.gr/isl/CRMdig/
csvw
http://www.w3.org/ns/csvw#
dc
http://purl.org/dc/elements/1.1/
dcam
http://purl.org/dc/dcam/
dcat
http://www.w3.org/ns/dcat#
dcmitype
http://purl.org/dc/dcmitype/
dct
http://purl.org/dc/terms/
doap
http://usefulinc.com/ns/doap#
edtf
https://periodo.github.io/edtf-ontology/edtfo.ttl#
foaf
http://xmlns.com/foaf/0.1/
geosparql
http://www.opengis.net/ont/geosparql#
lado
http://archaeology.link/ontology#
obo
http://purl.obolibrary.org/obo/
odrl
http://www.w3.org/ns/odrl/2/
orcid
http://orcid.org/
org
http://www.w3.org/ns/org#
owl
http://www.w3.org/2002/07/owl#
pleiades
https://pleiades.stoa.org/places/vocab#
prof
http://www.w3.org/ns/dx/prof/
prov
http://www.w3.org/ns/prov#
qb
http://purl.org/linked-data/cube#
rdf
http://www.w3.org/1999/02/22-rdf-syntax-ns#
rdfs
http://www.w3.org/2000/01/rdf-schema#
schema
http://schema.org/
sdo
https://schema.org/
sf
http://www.opengis.net/ont/sf#
sh
http://www.w3.org/ns/shacl#
skos
http://www.w3.org/2004/02/skos/core#
sosa
http://www.w3.org/ns/sosa/
ssn
http://www.w3.org/ns/ssn/
time
http://www.w3.org/2006/time#
vann
http://purl.org/vocab/vann/
void
http://rdfs.org/ns/void#
wgs
https://www.w3.org/2003/01/geo/wgs84_pos#
xsd
http://www.w3.org/2001/XMLSchema#

Legend

cClasses
opObject Properties
fpFunctional Properties
dpData Properties
apAnnotation Properties
pProperties
niNamed Individuals